Generate a table of statistical summaries of pharmacokinetic parameters
table_summary_PKpars_IQnca.Rd
PK parameters are summarized by a set of statistical values. The function acknowleges the reliability of NCA parameters and only includes reliable ones.
table_summary_PKpars_IQnca(
data,
stratify_by = c("GROUPN", "PROFILE"),
statistics = c("MEAN", "SD", "CVPMN", "GMEAN", "CVPGM", "MEDIAN", "MIN", "MAX"),
table_number = NULL,
table_split_by = NULL,
table_head = c("COMPOUND", "MATRIX", "ANALYTE"),
table_cols = c("PROFILE", "GROUP"),
table_pkpars = "standard",
labels = NULL,
roundfun = signif,
digits = c(MEAN = 3, SD = 3, CV = 3),
fontsize = 8,
page_orientation = c("landscape", "portrait"),
filename = NULL
)
Arguments
- data
IQnca object with individual PK parameters
- stratify_by
Columns that define the groups that are summarized
- statistics
-
Statistics to be calculated and displayed. Defined by charater vector of shortnames:
Short name Description ============ =========== N Number of subjects MEAN Arithmetic mean SD Arithmetic standard deviaion CVPMN Arithmetic coefficient of variation (percent) CI95MN 95% confidence interval for arithmetic mean CI90MN 90% confidence interval for arithmetic mean GMEAN Geometric mean GSD Geometric standard deviaion CVPGM Geometric coefficient of variation (percent) CI95GM 95% confidence interval for geometric mean CI90GM 90% confidence interval for geometric mean MEDIAN Median MIN Maximum value MAX Minimum value - table_number
Character string with table number information, added to the title for each table, if defined
- table_split_by
Column to split tables by (defaults to NULL, hence, only single table produced)
- table_head
Common information for split to be displayed above table
- table_cols
Columns to be displayed before the summary statistics
- table_pkpars
Character string defining the PK parameters to report in the table By default these parameters will be selected based on the "Standard" parameters defined in the IQparamNCA_Specification.xlsx document, subject to the profile and administration type. The user can select "All" or "Standard". Alternatively, parameterReport can also be a vector or parameter names (based on PKPARAMCD in IQparamNCA_Specification.xlsx). Instead of the standard or all ones then these will be considered in the listing (also subject to profile and administration type).
- labels
Customized labels for columns that substitute the column name in the IQdataNCA object. Applies to 'table_head', 'table_cols', and the entries of 'table_compare'
- roundfun
Rounding function to be used (defaults to signif)
- digits
Number of digits to be used for rounding
- fontsize
Fontsize to be used in the table
- page_orientation
Page orientation, 'landscape' or 'portrait'
- filename
Filename to export the table IQRrmd object to
Value
An IQRrmd object exported to a file or IQncaTableList
See also
Other TLF customized:
figure_indivConc_IQdataNCA()
,
figure_lines_IQdataNCA()
,
figure_summary_IQdataNCA()
,
listing_PKconc_IQdataNCA()
,
listing_PKpars_IQnca()
,
table_summary_PKconc_IQdataNCA()
,
write_IQncaFigure()
Examples
if (FALSE) {
pending
}