Generate a table of statistical summaries of pharmacokinetic concentrations

The table will be generated already as an IQRrmd object, allowing easy reporting in Word with IQReport. The table is done per PROFILE and GROUP. Important: Ignored records (INGORER & IGNORSUM) are not reported in these tables! Ignored subjects (IGNOREI) are removed as well.

table_summary_PKconc_IQdataNCA(
  data,
  stratify_by = c("GROUPN", "PROFILE"),
  statistics = c("MEAN", "SD", "CVPMN", "GMEAN", "CVPGM", "MEDIAN", "MIN", "MAX"),
  table_number = NULL,
  table_split_by = NULL,
  table_head = c("AGE", "RACE", "SEX"),
  table_cols = c("PROFILE", "GROUP"),
  table_compare = NULL,
  labels = NULL,
  roundfun = signif,
  digits = c(MEAN = 3, SD = 3, CVPMN = 3),
  fontsize = 8,
  page_orientation = c("landscape", "portrait"),
  filename = NULL
)

Arguments

data

IQdataNCA object

stratify_by

Columns that define the groups that are summarized

statistics

Statistics to be calculated and displayed. Defined by charater vector of shortnames:

Short name Description
============ ===========
N Number of subjects
MEAN Arithmetic mean
SD Arithmetic standard deviaion
CVPMN Arithmetic coefficient of variation (percent)
CI95MN 95% confidence interval for arithmetic mean
CI90MN 90% confidence interval for arithmetic mean
GMEAN Geometric mean
GSD Geometric standard deviaion
CVPGM Geometric coefficient of variation (percent)
CI95GM 95% confidence interval for geometric mean
CI90GM 90% confidence interval for geometric mean
MEDIAN Median
MIN Maximum value
MAX Minimum value
table_number

Character string with table number information, added to the title for each table, if defined

table_split_by

Column to split tables by (defaults to NULL, hence, only single table produced)

table_head

Common information for split to be displayed above table

table_cols

Columns to be displayed before the summary statistics

table_compare

Single column defining groups for which the statistics are displayed side-by-side

labels

Customized labels for columns that substitute the column name in the IQdataNCA object. Applies to 'table_head', 'table_cols', and the entries of 'table_compare'

roundfun

Rounding function to be used (defaults to signif)

digits

Number of digits to be used for rounding

fontsize

Fontsize to be used in the table

page_orientation

Page orientation, 'landscape' or 'portrait'

filename

Filename to export the table IQRrmd object to

Value

An IQRrmd object exported to a file

Examples

if (FALSE) {
pending
}