Generate line figures of PK concentration for reporting

Lines connect data for each profile within one individual. Lines can be color-stratified and distributed to different panels.

figure_lines_IQdataNCA(
  data,
  split_by = "PROFILE",
  lines_by = "GROUP",
  panel_by = "STUDYID",
  dosenorm = FALSE,
  time = "asis",
  use_TAFD = FALSE,
  figure_number = NULL,
  figure_head = NULL,
  labels = NULL,
  yscale = c("linlog", "lin", "log"),
  legend_pos = "bottom",
  sameXaxis = TRUE,
  sameYaxis = TRUE,
  filename = NULL,
  type = "overlay_figure",
  ...
)

Arguments

data

IQdataNCA object

split_by

Column to split figures to separate pages.

lines_by

grouping used for linetypes

panel_by

variable to create panels by

dosenorm

logical whether to plot dose normalized concentrations

time

Character string to defined the time information used ("asis", "nominal", "actual"). "asis" will use the selected time information in the dataset (TIME or TAFD). "nominal" will use NTIME or NTAFD. "actual" will use ATIME or ATAFD.

use_TAFD

logical. FALSE (default) uses TIME, NTIME, or ATIME, depending on 'time' settings. TRUE will use TAFD, NTAFD, or ATAFD.

figure_number

Character string with figure number information, added to the title for each figure, if defined

figure_head

Column names of covariates unique within pages to be displayed above the table

labels

names character vector with labels for columns

yscale

character identifying whether to plot linear ("lin") or semilogarithmic ("log") or both views ("linlog")

legend_pos

specifying legend position ("none", "left", "right", "bottom", "top", or two-element numeric vector)

sameXaxis

Flag whether to use same x axis scale across pages (splits). Defaults to TRUE.

sameYaxis

Flag whether to use same y axis scale across pages (splits). Defaults to TRUE.

filename

Name of PDF file to generate with plots

type

Type of figure (meta data)

...

Arguments to IQRoutputFigure to adjust plotting settings

Value

Returns a list of all plots if filename is NULL

Details

Ignored records (IGNORER) are removed from these plots. IGNORSUM and IGNORNCA records are included. Ignored subjects (IGNOREI) are included. In addition to a PDF file with the figures a folder containing amongst other meta information an rmd file will be generated. The RMD file is for seamless reporting in Word with IQReport.